Introduction | Fitting the model | Estimating the proportionality metrics
Package: countprop 1.1.1
countprop: Calculate Model-Based Metrics of Proportionality on Count-Based Compositional Data
Calculates metrics of proportionality using the logit-normal multinomial model. It can also provide empirical and plugin estimates of these metrics.
Authors:
countprop_1.1.1.tar.gz
countprop_1.1.1.zip(r-4.7-any)countprop_1.1.1.zip(r-4.6-any)countprop_1.1.1.zip(r-4.5-any)
countprop_1.1.1.tgz(r-4.6-any)countprop_1.1.1.tgz(r-4.5-any)
countprop_1.1.1.tar.gz(r-4.7-any)countprop_1.1.1.tar.gz(r-4.6-any)
countprop_1.1.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
countprop/json (API)
| # Install 'countprop' in R: |
| install.packages('countprop', repos = c('https://kevinmcgregor.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/kevinmcgregor/countprop/issues
Datasets:
- singlecell - Single cell sequencing data from mouse embryonic stem cells in G1 phase
Last updated from:345ac1d1eb. Checks:7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | NOTE | 123 | ||
| source / vignettes | OK | 155 | ||
| linux-release | NOTE | 123 | ||
| macos-release | NOTE | 178 | ||
| macos-oldrel | NOTE | 175 | ||
| windows-devel | NOTE | 95 | ||
| windows-release | NOTE | 96 | ||
| windows-oldrel | NOTE | 88 | ||
| wasm-release | OK | 92 |
Exports:convertSigmaebicebicPlotlogitNormalVariationlogLiklogVarTaylorFullmleLRmlePathnaiveVariationpluginVariation
Dependencies:bayesmcompositionsDEoptimRglassolatticeMASSMatrixNADARcppRcppArmadillorobustbasesurvivaltensorAtruncnormzCompositions
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Convert between CLR and ALR covariance matrices | convertSigma |
| Extended Bayesian Information Criterion | ebic |
| Extended Bayesian Information Criterion Plot | ebicPlot |
| Logit Normal Variation | logitNormalVariation |
| Log-Likelihood | logLik |
| Full logp Variance-Covariance | logVarTaylorFull |
| Maximum Likelihood Estimate for multinomial logit-normal model | mleLR |
| Maximum Likelihood Estimator Paths | mlePath |
| Naive (Empirical) Variation | naiveVariation |
| Plugin Variation (Deprecated) | pluginVariation |
| Single cell sequencing data from mouse embryonic stem cells in G1 phase | singlecell |